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Chris Schaffer

Assistant Professor

Primary Research Areas

  • biomedical instrumentation and diagnostics
  • systems biology

Research Focus

The Schaffer lab uses advanced optical techniques for in vivo studies of physiological processes in both normal and diseased states. The cell constitutes the basic unit of life, but many living systems depend on interactions that can only be studied in intact animals, such as the coupling between local blood flow and neural activity in the brain. Optical techniques provide one way to overcome the ensuing challenge of characterizing physiology with single cell resolution in intact biological systems. The group exploits nonlinear interactions between femtosecond duration laser pulses and biological materials to provide a means to:

  • Take three-dimensional images of fluorescently-labeled tissue with micrometer resolution as well as quantitatively measure physiological variables such as blood flow or neural activity, and
  • Produce three-dimensionally localized damage to specifically targeted biological structures as a means to elucidate function and model disease.

Educational Background

  • Ph.D., Harvard University, Physics, 2001
  • B.S., University of Florida, Physics, 1995 

Research Grants

  • OPTIMIZED LASER SOURCE FOR DEEP-TISSUE, IN VIVO, NONLINEAR MICROSCOPY IN RODENT BRAIN
  • TWO-PHOTON IMAGING OF CEREBRAL MICROCIRCULATION IN ANIMAL MODELS OF POLYCYTHEMIA VERA
  • OPTIMIZED MICROSCOPE OBJECTIVE AND FLUORESCENCE DETECTION OPTICS FOR DEEP-TISSUE, IN VIVO, NONLINEAR MICROSCOPY IN RODENT BRAIN
  • ROLE OF MICROVASCULAR LESIONS IN ALZHEIMER'S DISEASE
  • ALL-OPTICAL ANIMAL MODELS OF SMALL-SCALE STROKE
  • FACILITY EQUIPMENT USE AGREEMENT
  • FEMTOSECOND LASER ABLATION TO UNDERSTAND AND CONTROL CORTICAL EPILEPSY

Selected Publications

PubMed Listings
Light and Matter Interactions: Going with the Grain

Chris B. Schaffer
Nature Photonics 2, 73 (2008)

Photonic band-gap fiber gas cell fabricated using femtosecond micromachining

Christopher J. Hensley , Daniel H. Broaddus, Chris B. Schaffer, and Alexander L. Gaeta
Optics Express 15, 6690 (2007)

Large two-photon absorptivity of hemoglobin in the infrared range of 780-880 nm

G. Omar Clay, Chris B. Schaffer, and David Kleinfeld
Journal of Chemical Physics 126, 025102 (2007)

Penetrating arterioles are a bottleneck in the perfusion of neocortex

Nozomi Nishimura, Chris B. Schaffer, Beth Friedman, Patrick D. Lyden, and David Kleinfeld
Proceedings of the National Academy of Sciences, USA 104, 365 (2007)

Ultrafast processes for bulk modification of transparent materials

Kazuyoshi Itoh, Wataru Watanabe, Stefan Nolte, and Chris B. Schaffer
Materials Research Society Bulletin, August 2006, Vol. 71, p. 620

Numerical aperture dependence of damage and supercontinuum generation from femtosecond laser pulses in bulk fused silica

Jonathan B. Ashcom, Rafael R. Gattass, Chris B. Schaffer, and Eric Mazur
Journal of the Optical Society of America B 23, 2317 (2006)

Spectroscopic analysis of the oxygenation state of hemoglobin using coherent anti-Stokes Raman scattering

Hilde A. Rinia, Mischa Bonn, Erik M. Vartiainen, Chris B. Schaffer, and Michiel Müller
Journal of Biomedical Optics 11, 050502 (2006)

Spectroscopy of third-harmonic generation: evidence for resonances in model compounds and ligated hemoglobin

G. Omar Clay, Andrew C. Millard, Chris B. Schaffer, Juerg Aus-der-Au, Philbert S. Tsai, Jeffrey A. Squier, and David Kleinfeld
Journal of the Optical Society of America B 23, 932 (2006)