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Timothy P. O'Brien

Associate Professor of Genetic

Primary Research Areas

  • cellular & molecular physiology
  • physiological genomics

Research Focus

  • Understanding how cell signaling interactions and their accompanying genomic regulatory networks coordinate development
  • Combine mouse genetics with genomic and computational studies to define and experimentally test regulatory network structure and dynamics
  • Specific components of evolutionarily conserved signaling pathways
  • Generated a collection of Spry2 mutant mice that constitute an allelic series ranging from reduced expression to complete loss of Spry2 function
  • Using these mice to examine how cross-talk between conserved pathways, such as FGF, BMP and SHH, guides dosage sensitive cellular interactions that shape developing structures
  • Head and face, the branched architecture of the respiratory tree and the collecting ducts of the kidney
  • Constructed a computational pipeline to search for patterns based on positional relationships between genes and putative regulatory modules
  • Studying how the genome is organized to coordinate gene expression during development
  • Evolve the structure of genomic regulatory networks that guide morphogenesis
  • Use genetic screens to identify genes that are essential for mouse development
  • Classic genetic resource in the mouse, the piebald deletion complex
  • Perform genetic screens focusing on specific chromosomal regions

Research Grants

  • REGION BASED FUNCTIONAL ANNOTATION OF THE MOUSE GENOME